PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008995-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 334aa    MW: 36384.2 Da    PI: 7.6609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008995-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-1199143347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+  ++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  WALNUT_00008995-RA  99 PWTEDEHRMFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKY 143
                         7*****************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4292148IPR017930Myb domain
SuperFamilySSF466892.54E-1694149IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-1995147IPR006447Myb domain, plants
SMARTSM007177.4E-996146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-1097142IPR009057Homeodomain-like
CDDcd001672.47E-899144No hitNo description
PfamPF002491.6E-999143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSHYAGS GSGLNQTGYN  60
TPGSPGETPD HGMAADGYAS EDFVPGSSSS CRERKKGIPW TEDEHRMFLL GLQKLGKGDW  120
RGISRNYVIS RTPTQVASHA QKYFIRQTNV SRRKRRSSLF DIIADESVET QMVPRDFLSV  180
NQSQAETQSN PPLPTTPALD EECESMDSSN SNDGDPVPPN PDSSQPPYPV VYPAYFSPYF  240
PFSFPFWPGY TTEATKKETH EVLKPTAVHS KSPINVDELV GMSKLSLGES IGHTGTSSLS  300
LKLLEGSSRQ SAFHANPASE SSNINSSSSP IHAV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448819.10.0PREDICTED: transcription factor MYB1R1
TrEMBLA0A0A0L2630.0A0A0A0L263_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s15510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72303145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-101MYB_related family protein